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  3. ELIXIR-EE selfstudy materials (LTAT.02.998)
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ELIXIR-EE selfstudy materials 2024/25 fall

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Explore Our Training Topics

Each of these topics is designed to support your learning journey, whether you’re joining our live sessions or studying on your own. While we encourage students to register for our hands-on training, these materials are also structured for self-study, allowing you to build foundational skills at your own pace.

Python:

training repository can be found at: https://github.com/ELIXIREstonia/2024-02-23-Python
you'll find jupyther notebook file from there, that can be

  • opened in google Colab - link in the document.
  • or you can install jupyter notebook locally - see instructions (pip install notebook).

R:

Consists of two parts: basic and visualisation:
basic training repository can be found at: https://github.com/ELIXIREstonia/2024-10-02-R-basic
you'll find Rmarkdown file, that should be opened within Rstudio. Best is to download / clone entire repository to your computer and open as a project in Rstudio.
visualisation training repository can be found at: https://github.com/ELIXIREstonia/2024-10-09-R-visualisation

Bash:

Consists of two parts:
Carpentries based basic training page: https://elixirestonia.github.io/2024-03-08-shell-novice/
and https://elixirestonia.github.io/2021-10-19-shell-advanced/
you'll need bash prompt to do the exercises - see setup page for instructions.

Git:

A brief introdction to GIT : https://zenodo.org/records/7973233

SQL:

TBA

Docker and devcontainers

TBA

  • Institute of Computer Science
  • Faculty of Science and Technology
  • University of Tartu
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