Main Schedule Links Previous Seminars

Schedule

• Feb 9. - Raivo Kolde - epigenetic project
• Feb 23 - Elena Nikolaeva (mentor Meelis Kull)
  • "An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells", Ipsita Banerjee,Spandan Maiti, Natesh Parashurama and Martin Yarmush,Bioinformatics (2010) 26 (10): 1332-1339.
• Mar 2 - Priit Adler (mentor Sven Laur) CANCELED
  • Engreitz J, Morgan A, Dudley J, Chen R, Thathoo R, Altman R and Butte A:Content-based microarray search using differential expression profiles. BMC Bioinformatics 2010, 11:603 (pdf)
• Mar 9 - Tauno Metsalu (mentor Raivo Kolde)
  • Stephen F Madden, Susan B Carpenter, Ian B Jeffery, Harry Björkbacka, Katherine A Fitzgerald, Luke A O'Neill and Desmond G Higgins: Detecting microRNA activity from gene expression data. BMC Bioinformatics 2010, 11:257
• Mar 16 - Sten Ilmjärv (mentor Sven Laur)
  • Leon French1, Paul Pavlidis:Relationships between Gene Expression and Brain Wiring in the Adult Rodent Brain PLoS Computational Biology 2011, 7(1): e1001049
• Mar 23 - Konstantin Tretjakov (mentor Jaak Vilo)
  • R.David Hawkins,Gary C. Hon, and Bing Ren. Next-generation genomics: an integrative approach. Nature Reviews Genetics 11, 476-486. (pdf)
• Mar 30 - Raivo Kolde (mentor Sten Ilmjärv)
  • Jason Ernst, Manolis Kellis Discovery and characterization of chromatin states for systematic annotation of the human genome.. Nature Biotechnology 2010 817-25.. (pdf)
  • Jason Ernst, Pouya Kheradpour, Tarjei S. Mikkelsen, Noam Shoresh, Lucas D. Ward, Charles B. Epstein, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael Coyne, Manching Ku, Timothy Durham, Manolis Kellis & Bradley E. Bernstein Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 2011 (pdf)
• Apr 6 - Anna Leontjeva (mentor Balaji Rajashekar)
  • Zhang Zhang, Jeffrey P. Townsend:Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences. PLoS Computational Biology, 2009
• Apr 13 - Vijayachitra Modhukur (mentor Raivo Kolde)
  • Liu, Zhen Shao and Guo-Cheng Yuan:Prediction of Polycomb target genes in mouse embryonic stem cells. Genomics, 2010
• April 20. Dmitri Melnikov
  • "Fast and accurate short read alignment with Burrows–Wheeler transform" Heng Li and Richard Durbin, Bioinformatics (2009) 25 (14): 1754-1760
  • "Fast and accurate long read alignment with Burrows–Wheeler transform" Heng Li and Richard Durbin, Bioinformatics (2010) 26 (5): 589-595.
• May 4 - Tauno Metsalu (mentor Raivo Kolde)
  • Tauno Metsalu, Raivo Kolde and Jaak Vilo: Statistical methods for estimating microRNA expression from targets' expression data (practice for oral presentation in SoCBiN-2011)
• May 11 - Priit Adler (mentor Sven Laur)
  • Engreitz J, Morgan A, Dudley J, Chen R, Thathoo R, Altman R and Butte A:Content-based microarray search using differential expression profiles. BMC Bioinformatics 2010, 11:603 (pdf)