Articles
- Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors.
Herschkowitz JI, Simin K, Weigman VJ, Mikaelian I, Usary J, Hu Z, Rasmussen KE, Jones LP, Assefnia S, Chandrasekharan S, Backlund MG, Yin Y, Khramtsov AI, Bastein R, Quackenbush J, Glazer RI, Brown PH, Green JE, Kopelovich L, Furth PA, Palazzo JP, Olopade OI, Bernard PS, Churchill GA, Van Dyke T, Perou CM. Genome Biol. 2007;8(5):R76.
http://genomebiology.com/2007/8/5/R76/abstract
- Integrated miRNA and mRNA expression profiling of mouse mammary tumor models identifies miRNA signatures associated with mammary tumor lineage
Min Zhu, Ming Yi, Chang-Hee Kim, Chuxia Deng, Yi Li, Daniel Medina, Robert Stephen and Jeffrey E Green
Genome Biology 2011, 12:R77 doi:10.1186/gb-2011-12-8-r77
http://genomebiology.com/2011/12/8/R77/abstract
- Sex differences in disease risk from reported genome-wide association study findings.
Liu LY, Schaub MA, Sirota M, Butte AJ.
Human Genetics. 2011 Aug 20
http://www.springerlink.com/content/a8m4l35368124785/
- Discovery and Preclinical Validation of Drug Indications Using Compendia of Public Gene Expression Data
Marina Sirota, Joel T. Dudley, Jeewon Kim, Annie P. Chiang, Alex A. Morgan, Alejandro Sweet-Cordero, Julien Sage and Atul J. Butte
Sci Transl Med 17 August 2011
http://stm.sciencemag.org/content/3/96/96ra77.short
- Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases
Lopes, T. J. S., Schaefer, M., Shoemaker, J., Matsuoka, Y., Fontaine, J.-F., Neumann, G., Andrade-Navarro, M. A., Kawaoka, Y., Kitano, H. Bionformatics
http://bioinformatics.oxfordjournals.org/cgi/content/short/27/17/2414
- OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes
ou, J. S., Kelly, T. K., De Carvalho, D. D., Taberlay, P. C., Liang, G., Jones, P. A.
http://www.pnas.org/content/108/35/14497.short
- Tissue-specific prediction of directly regulated genes
McLeay, R. C., Leat, C. J., Bailey, T. L.
http://bioinformatics.oxfordjournals.org/cgi/content/short/27/17/2354
- The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes, Matthew N. McCall et al.(pdf)
- Stage prediction of embryonic stem cell differentiation from genome-wide expression data
Zagar, L., Mulas, F., Garagna, S., Zuccotti, M., Bellazzi, R., Zupan, B
http://bioinformatics.oxfordjournals.org/cgi/content/short/27/18/2546
- A Directed Protein Interaction Network for Investigating Intracellular Signal Transduction
Arunachalam Vinayagam1*, Ulrich Stelzl1,2*, Raphaele Foulle1, Stephanie Plassmann1, Martina Zenkner1, Jan Timm1, Heike E. Assmus3, Miguel A. Andrade-Navarro1, and Erich E. Wanker1
http://stke.sciencemag.org/cgi/content/full/sigtrans;4/189/rs8
- The PathOlogist: an automated tool for pathway-centric analysis
Sharon I Greenblum, Sol Efroni, Carl F Schaefer and Ken H Buetow
http://www.biomedcentral.com/1471-2105/12/133
- A high-resolution map of human evolutionary constraint using 29 mammals
Lindblad-Toh...Kellis
Nature Published online 12 October 2011
http://www.nature.com/nature/journal/vaop/ncurrent/full/nature10530.html