Main reading choices for oral presentations

Check Links and Daily picks, e.g.

Eilon Sharon, Shai Lubliner, and Eran Segal A Feature-Based Approach to Modeling Protein–DNA Interactions PLoS Comput Biol. 2008 August; 4(8): e1000154. doi: 10.1371/journal.pcbi.1000154. Article

Selected by Karl Potisepp: Martin Rosvall, Carl Bergstrom Mapping Change in Large Networks PLoS One 2010 January PDF

Selected by Krista Liin: Rod K. Nibbe, Mehmet Koyutürk, Mark R. Chance An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer Plos Computational Biology 2010 January Article

Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun & Eileen E. M. Furlong Combinatorial binding predicts spatio-temporal cis-regulatory activity Nature 2009 November Article

Selected by Elena: Benjamin Haibe-Kains, Christine Desmedt, Francoise Rothe, Martine Piccart, Christos Sotiriou and Gianluca Bontempi A fuzzy gene expression-based computational approach improves breast cancer prognostication Genome Biology 2010 Feb abstract

Selected by Meelis: Hoffman MM, Birney E An effective model for natural selection in promoters. Genome Res 2010 Mar 1. pdf

Stoyan Georgiev , Alan P Boyle , Karthik Jayasurya , Xuan Ding, Sayan Mukherjee and Uwe Ohler Evidence-ranked motif identification. Genome Biol. (2010) vol. 11 (2) pp.


Selected by Riivo: Renuka R. Nayak1, Michael Kearns2, Richard S. Spielman3,6 and Vivian G. Cheung Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. Genome Res. (2009) vol. 19 (11) pp. 1953-62pdf

Bernie J. Daigle, Jr, Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance. PLOS Comp. Biology (2010) vol. 6 pdf

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